My Research Publications

Sharing insights into the biology of plants

Publications: 21 (Nov, 2023) | * Corresponding author: 5 | Citations: 1187

h-index: 10 | i10-index: 11 | blue font are my own INDEPENDENT projects

Raghuram Badmi, Anupam Gogoi and Barbara Doyle Prestwich. Secondary Metabolites and Their Role in Strawberry Defense. Plants 2023, 12, 3240. doi.org/10.3390/plants12183240
Raghuram Badmi* and Barbara Doyle Prestwich (2023). Linker H1 is an ‘epi’center of plant defence. Trends in Genetics. doi.org/10.1016/j.tig.2023.06.007 (corresponding author)
Raghuram Badmi, Torstein Tengs, May Bente Brurberg, Abdelhameed Elameen, Lisa Karine Haugland, Carl Gunnar Fossdal, Timo Hytonen, Paal Krokene and Tage Thorstensen. Transcriptional profiling of defence responses to Botrytis cinerea infection in leaves of Fragaria vesca plants soil-drenched with β-aminobutyric acid (BABA). Front. Plant Sci.
Sec. Plant Pathogen Interactions. https://doi.org/10.3389/fpls.2022.1025422
Bhagat, Prakash K., Deepanjali Verma, Kirti Singh, Raghuram Badmi, Deepika Sharma, and Alok K. Sinha. 2022. Dynamic Phosphorylation of miRNA Biogenesis Factor HYL1 by MPK3 Involving Nuclear–Cytoplasmic Shuttling and Protein Stability in Arabidopsis. International Journal of Molecular Sciences 23, no. 7: 3787. https://doi.org/10.3390/ijms23073787
Donal Shiels, Barbara Doyle Prestwich, Okjae Koo, Chidananda Nagamangala Kanchiswamy, Roisin O’Halloran and Raghuram Badmi* (2022) Hemp Genome Editing—Challenges and Opportunities. Front. Genome Ed. 4:823486. https://doi.org/10.3389/fgeed.2022.823486
Raja S Payyavula, Raghuram Badmi, Sara S Jawdy, Miguel Rodriguez, Lee Gunter, Robert W Sykes, Kimberly A Winkeler, Cassandra M Collins, William H Rottmann, Jin-Gui Chen, Xiaohan Yang, Gerald A Tuskan, Udaya C Kalluri. Biomass formation and sugar release efficiency of Populus modified by altered expression of a NAC transcription factor. Plant Direct (2022). https://onlinelibrary.wiley.com/doi/10.1002/pld3.419
Raghuram Badmi; Raja Payyavula; Garima Bali; Hao-Bo Guo; Sara Jawdy; Lee Gunter; Xiaohan Yang; Kimberly A Winkeler; Cassandra Collins; William H Rottmann; Kelsey Yee; Miguel Rodriguez; Robert Sykes; Steve Decker; Mark Davis; Arthur Ragauskas; Gerald Tuskan; Udaya C Kalluri. A New Calmodulin-Binding Protein Expresses in the Context of Secondary Cell Wall Biosynthesis and Impacts Biomass Properties in Populus. Frontiers in Plant Science. (2018a). 9:1669 doi: 10.3389/fpls.2018.01669.
Raghuram Badmi*, Arsheed H. Sheikh, Prakash K. Bhagat, Deepanjali Verma, Stanzin Noryang and Alok Krishna Sinha. Possible role of plant MAP Kinases in the biogenesis and transcription regulation of rice microRNA pathway factors. Plant Physiology and Biochemistry. (2018b). 129: 238-243. https://doi.org/10.1016/j.plaphy.2018.06.005(*corresponding author).
Chandana Pandey, Raghuram Badmi, Alok Krishna Sinha, Meetu Gupta. miRNA plays a role in the antagonistic effect of selenium on arsenic stress in rice seedlings. Metallomics. (2015). 7(5):857-66. https://doi.org/10.1039/c5mt00013k
Raghuram Badmi, Arsheed H Sheikh, Yashika Rustagi, Alok Krishna Sinha. MicroRNA biogenesis factor DRB1 is a phosphorylation target of mitogen activated protein kinase, MPK3 in both rice and Arabidopsis. FEBS Journal. (2015). 282: 521–536. https://doi.org/10.1111/febs.13159
Raghuram Badmi, Arsheed H Sheikh, Alok Krishna Sinha. Regulation of MAP kinase transcripts by microRNAs in Oryza sativa. Plant Signaling and Behavior. (2014)9 (10), e972130. https://doi.org/10.4161/psb.29804
Vismitha Sethi, Raghuram Badmi, Alok Krishna Sinha, Sudip Chattopadhyay. A Mitogen-Activated Protein Kinase Cascade Module, MKK3-MPK6 and MYC2, Is Involved in Blue Light-Mediated Seedling Development in Arabidopsis. The Plant Cell. (2014) 26 (8), 3343-3357. https://doi.org/10.1105/tpc.114.128702
Arsheed H Sheikh, Raghuram Badmi, Lennart Eschen-Lippold, Dierk Scheel, Justin Lee, Alok Krishna Sinha. Agroinfiltration by cytokinin producing Agrobacterium strain GV3101 primes the plant defense response in Nicotiana tabacum. Molecular Plant-Microbe Interactions. (2014) 27 (11), 1175-1185. https://doi.org/10.1094/MPMI-04-14-0114-R
Arsheed H Sheikh, Raghuram Badmi, Siddhi K Jalmi, Dhammaprakash P Wankhede, Pallavi Singh, Alok K Sinha. Interaction between two rice mitogen activated protein kinases and its possible role in plant defense. BMC Plant Biology. 13:121, (2013). https://doi.org/10.1186/1471-2229-13-121
Susheel Kumar Raina, Dhammaprakash Pandhari Wankhede, Monika Jaggi, Pallavi Singh, Siddhi Kashinath Jalmi, Raghuram Badmi, Arsheed Hussain Sheikh and Alok Krishna Sinha. CrMPK3, a mitogen activated protein kinase from Catharanthus roseus and its possible role in stress induced biosynthesis of monoterpenoid indole alkaloids. BMC Plant Biology. (2012) 12:134. https://doi.org/10.1186/1471-2229-12-134
Alok Krishna Sinha, Monika Jaggi, Raghuram Badmi and Narendra Tuteja. Mitogen-activated protein kinase signaling in plants under abiotic stress. Plant Signaling & Behavior. (2011) 6:2, 196-203. https://doi.org/10.4161/psb.6.2.14701
Kudupudi Prabhakara Rao, Tambi Richa, Kundan Kumar, Raghuram Badmi, and Alok Krishna Sinha. In Silico Analysis Reveals 75 Members of Mitogen-Activated Protein Kinase Kinase Kinase Gene Family in Rice. DNA Research. 17, 139–153, (2010). https://doi.org/10.1093/dnares/dsq011
Raghuram Badmi*, Arsheed Hussain Sheikh. Comparative transcriptomics reveal conserved modules of plant defence against different pathogens in Strawberry. (*corresponding author) bioRxiv https://doi.org/10.1101/2020.06.07.138420
Raghuram Badmi, Yupeng Zhang, Torstein Tengs, May Bente Brurberg, Paal Krokene, Carl Gunnar Fossdal, Timo Hytönen, Tage Thorstensen. Induced and primed defence responses of Fragaria vesca to Botrytis cinerea infection. bioRXiv. doi.org/10.1101/692491
Raghuram Badmi*. Comparative transcriptomics identifies Botrytis cinerea induced conserved defences across different tissues of Fragaria vesca. (*corresponding author) https://doi.org/10.1101/2020.07.18.210138
Arsheed H. Sheikh, Rana M. Fraz Hussain, Naheed Tabassum, Raghuram Badmi, Sylvestre Marillonnet, Dierk Scheel, Justin Lee, Alok Sinha. Possible role of WRKY transcription factors in regulating immunity in Oryza sativa ssp. indica. Physiological and Molecular Plant Pathology. https://doi.org/10.1016/j.pmpp.2021.101623